Empowering biologists to decode omics data: the Genekitr R package and web server.

ABSTRACT:

Background

A variety of high-throughput analyses, such as transcriptome, proteome, and metabolome analysis, have been developed, producing unprecedented amounts of omics data. These studies generate large gene lists, of which the biological significance shall be deeply understood. However, manually interpreting these lists is difficult, especially for non-bioinformatics-savvy scientists.

Results

We developed an R package and a corresponding web server-Genekitr, to assist biologists in exploring large gene sets. Genekitr comprises four modules: gene information retrieval, ID (identifier) conversion, enrichment analysis and publication-ready plotting. Currently, the information retrieval module can retrieve information on up to 23 attributes for genes of 317 organisms. The ID

SUBMITTER: Liu Y 

PROVIDER: S-EPMC10205030 | biostudies-literature | 2023 May

REPOSITORIES: biostudies-literature