Genofunc: genome annotation and identification of genome features for automated pipelining analysis of virus whole genome sequences.

ABSTRACT:

Background

Viral genomics and epidemiology have been increasingly important tools for analysing the spread of key pathogens affecting daily lives of individuals worldwide. With the rapidly expanding scale of pathogen genome sequencing efforts for epidemics and outbreaks efficient workflows in extracting genomic information are becoming increasingly important for answering key research questions.

Results

Here we present Genofunc, a toolkit offering a range of command line orientated functions for processing of raw virus genome sequences into aligned and annotated data ready for analysis. The tool contains functions such as genome annotation, feature extraction etc. for processing of large genomic datasets both manual or as part of pipeline such as Snakemake or Nextflow ready

SUBMITTER: Yu X 

PROVIDER: S-EPMC10227794 | biostudies-literature | 2023 May

REPOSITORIES: biostudies-literature