Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Draft Genome Sequence of Pedococcus sp. Strain 5OH_020, Isolated from California Grassland Soil.

ABSTRACT: The draft genome sequence of the soil bacterium Pedococcus sp. strain 5OH_020, isolated on a natural cobalamin analog, comprises 4.4 Mbp, with 4,108 protein-coding genes. Its genome encodes cobalamin-dependent enzymes, including methionine synthase and class II ribonucleotide reductase. Taxonomic analysis suggests that it is a novel species within the genus Pedococcus.

SUBMITTER: Green MA

PROVIDER: S-EPMC10281107 | biostudies-literature | 2023 Jun

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Draft Genome Sequence of Pedococcus sp. Strain 5OH_020, Isolated from California Grassland Soil.

Green Myka A MA Alvarez-Aponte Zoila I ZI Trotter Valentine V VV Taga Michiko E ME

Microbiology resource announcements 20230508 6

The draft genome sequence of the soil bacterium Pedococcus sp. strain 5OH_020, isolated on a natural cobalamin analog, comprises 4.4 Mbp, with 4,108 protein-coding genes. Its genome encodes cobalamin-dependent enzymes, including methionine synthase and class II ribonucleotide reductase. Taxonomic analysis suggests that it is a novel species within the genus Pedococcus. ...[more]

PMID: 37154712

Similar Datasets

Draft Genome Sequence of Duganella sp. Strain DN04, Isolated from Cultivated Soil.

Project description:Here, we sequenced Duganella sp. strain DN04, a novel species within the genus Duganella that was isolated from a maize field in North Carolina. The assembled draft genome size is 6,562,230 bp, with a total of 6,039 protein coding sequences and 3,889 functionally assigned genes, including genes putatively involved in the colonization of plants.

| S-EPMC6687938 | biostudies-literature

Draft Genome Sequence of Serratia sp. Strain S1B, Isolated from Mercury-Contaminated Soil.

Project description:We report here the draft genome sequence of Serratia sp. strain S1B, comprising 7,710,841 bases, 7,075 coding sequences, a G+C content of 45.9%, and 138 RNAs. Notably, a repertoire of biodegradative genes, several occurring on genomic islands, was also identified, which enhances our understanding of the environmental relevance of Serratia spp.

| S-EPMC6013639 | biostudies-other

Draft Genome Sequence of Geobacter sp. Strain SVR, Isolated from Antimony Mine Soil.

Project description:We report here the draft genome sequence of Geobacter sp. strain SVR, isolated from antimony mine soil in Hyogo Prefecture, Japan. The genome sequence data in this study will provide useful information for understanding bacterial antimonate reduction.

| S-EPMC7317101 | biostudies-literature

Draft Genome Sequence of Cytophagales sp. Strain WSM2-2, Isolated from Garden Soil.

Project description:We report the draft genome sequence of Cytophagales sp. strain WSM2-2, isolated from garden soil. A 5.5-Mb genome sequence comprising four contigs was successfully obtained using Illumina NovaSeq and MinION sequencers. This draft genome sequence will contribute to the genomic knowledge of the bacterial order Cytophagales.

| S-EPMC7849703 | biostudies-literature

Draft Genome Sequence of Ralstonia sp. Strain GA3-3, Isolated from Australian Suburban Soil.

Project description:Ralstonia sp. strain GA3-3 is a hexachlorocyclohexane (HCH)-degrading bacterial strain isolated from suburban soil in Canberra, Australia. The genome of strain GA3-3 was sequenced to investigate its ability to degrade ?-HCH. Here, we report the annotated genome sequence of this strain.

| S-EPMC3703592 | biostudies-literature

Draft Genome Sequence of a Terrestrial Planctomycete, Singulisphaera sp. Strain GP187, Isolated from Forest Soil.

Project description:Here, we present the draft genome sequence of a novel species of the genus Singulisphaera (phylum Planctomycetes, family Isosphaeraceae) isolated from soil. Singulisphaera sp. strain GP187 has a relatively large mobilome and numerous novel genes that may contribute to the production of bioactive molecules.

| S-EPMC7729403 | biostudies-literature

Draft Genome Sequence of Bacillus sp. Strain IITD106, Isolated from Oil-Contaminated Soil.

Project description:Here, we report the whole-genome sequence of Bacillus sp. strain IITD106. The bacterium has the unique ability to produce saponins. The complete nucleotide sequence will provide insights into the various genes and regulators involved in the biosynthesis of saponin.

| S-EPMC8638583 | biostudies-literature

Draft Genome Sequence of Pandoraea sp. Strain SD6-2, Isolated from Lindane-Contaminated Australian Soil.

Project description:Pandoraea sp. strain SD6-2 is a ?-hexachlorocyclohexane-degrading bacterial strain isolated from lindane-contaminated soil in Queensland, Australia. The genome of SD6-2 was sequenced to investigate its ability to degrade ?-hexachlorocyclohexane. Here we report the annotated genome sequence of this strain.

| S-EPMC3703593 | biostudies-literature

Draft genome sequence of phenol degrading Acinetobacter sp. Strain V2, isolated from oil contaminated soil.

Project description:We report here the draft genome sequence of Acinetobacter sp. Strain V2 isolated from the oil contaminated soil collected from ENGEN, Amanzimtoti, South Africa. Degradation of phenolic compounds such as phenol, toluene, aniline etc. at 400ppm in 24h and oil degrading capability makes this organism an efficient multifunctional bioremediator. Genome sequencing of Acinetobacter spp. V2 was carried out on Illumina HiSeq 2000 platform (performed by the Beijing Genomics Institute [BGI], Shenzhen, China). The data obtained revealed 643 contigs with genome size of 4.0 Mb and G+C content of 38.59%.

| S-EPMC5470343 | biostudies-literature

Draft Genome Sequence of Massilia sp. Strain MC02, Isolated from a Sandy Loam Maize Soil.

Project description:From farmed corn soil in California, we isolated and sequenced a new member of the genus Massilia, Massilia sp. strain MC02. Massilia sp. MC02 has an assembled draft genome of 5,023,356 bp with a total of 4,790 protein-encoding genes and 3,028 predicted proteins, 47 tRNA genes, and 2 rRNA operons.

| S-EPMC6687916 | biostudies-literature