Dataset Information

Template independent component analysis with spatial priors for accurate subject-level brain network estimation and inference.

ABSTRACT: Independent component analysis is commonly applied to functional magnetic resonance imaging (fMRI) data to extract independent components (ICs) representing functional brain networks. While ICA produces reliable group-level estimates, single-subject ICA often produces noisy results. Template ICA is a hierarchical ICA model using empirical population priors to produce more reliable subject-level estimates. However, this and other hierarchical ICA models assume unrealistically that subject effects are spatially independent. Here, we propose spatial template ICA (stICA), which incorporates spatial priors into the template ICA framework for greater estimation efficiency. Additionally, the joint posterior distribution can be used to identify brain regions engaged in each network using an excursions set approach. By leveraging spatial dependencies and avoiding massive multiple comparisons, stICA has high power to detect true effects. We derive an efficient expectation-maximization algorithm to obtain maximum likelihood estimates of the model parameters and posterior moments of the latent fields. Based on analysis of simulated data and fMRI data from the Human Connectome Project, we find that stICA produces estimates that are more accurate and reliable than benchmark approaches, and identifies larger and more reliable areas of engagement. The algorithm is computationally tractable, achieving convergence within 12 hours for whole-cortex fMRI analysis.

SUBMITTER: Mejia AF

PROVIDER: S-EPMC10292763 | biostudies-literature | 2023

REPOSITORIES: biostudies-literature

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Template independent component analysis with spatial priors for accurate subject-level brain network estimation and inference.

Mejia Amanda F AF Bolin David D Yue Yu Ryan YR Wang Jiongran J Caffo Brian S BS Nebel Mary Beth MB

Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America 20220927 2

Independent component analysis is commonly applied to functional magnetic resonance imaging (fMRI) data to extract independent components (ICs) representing functional brain networks. While ICA produces reliable group-level estimates, single-subject ICA often produces noisy results. Template ICA is a hierarchical ICA model using empirical population priors to produce more reliable subject-level estimates. However, this and other hierarchical ICA models assume unrealistically that subject effects ...[more]

PMID: 37377728

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Project description:BackgroundThe treatment of post-facial palsy synkinesis (PFPS) remains inadequate. Previous studies have confirmed that brain plasticity is involved in the process of functional restoration. Isolated activation has been well studied, however, the brain works as an integrity of several isolated regions. This study aimed to assess the alteration of the brain network topology with overall and local characteristics of information dissemination. Understanding the neural mechanisms of PFPS could help to improve therapy options and prognosis.MethodsPatients with facial synkinesis and healthy controls (HCs) were estimated using functional magnetic resonance imaging (fMRI) of resting-state. Subsequently, an independent component analysis (ICA) was used to extract four subnets from the whole brain. Then we used the measurements of graph theory and calculated in the whole-brain network and each sub-network.ResultsWe found no significant difference between the patient group and the HCs on the whole-brain scale. Then we identified four subnetworks from the resting-state data. In the sub-network property analysis, patients' locally distributed properties in the sensorimotor network (SMN) and ventral default mode network (vDMN) were reduced. It revealed that γ (10,000 permutations, P=0.048) and S (10,000 permutations, P=0.022) within the SMN progressively decreased in patients with PFPS. For the analysis of vDMN, significant differences were found in γ (10,000 permutations, P=0.019), Elocal (10,000 permutations, P=0.008), and β (10,000 permutations, P=0.011) between the groups.ConclusionsOur results demonstrated a reduction in local network processing efficiency in patients with PFPS. Therefore, we speculate that decreased characteristics in the intra-vDMN and intra-SMN, rather than the whole-brain network, may serve distinct symptoms such as facial nerve damage or more synkinetic movements. This finding of the alteration of network properties is a small step forward to help uncover the underlying mechanism.

Dataset Information

Template independent component analysis with spatial priors for accurate subject-level brain network estimation and inference.

Publications

Template independent component analysis with spatial priors for accurate subject-level brain network estimation and inference.

Similar Datasets

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