GePI: large-scale text mining, customized retrieval and flexible filtering of gene/protein interactions.

ABSTRACT: We present GePI, a novel Web server for large-scale text mining of molecular interactions from the scientific biomedical literature. GePI leverages natural language processing techniques to identify genes and related entities, interactions between those entities and biomolecular events involving them. GePI supports rapid retrieval of interactions based on powerful search options to contextualize queries targeting (lists of) genes of interest. Contextualization is enabled by full-text filters constraining the search for interactions to either sentences or paragraphs, with or without pre-defined gene lists. Our knowledge graph is updated several times a week ensuring the most recent information to be available at all times. The result page provides an overview of the outcome of a search, wit

SUBMITTER: Faessler E 

PROVIDER: S-EPMC10320155 | biostudies-literature | 2023 Jul

REPOSITORIES: biostudies-literature