ProtView: A Versatile Tool for <i>In Silico</i> Protease Evaluation and Selection in a Proteomic and Proteogenomic Context.

ABSTRACT: Many tools have been created to generate in silico proteome digests with different protease enzymes and provide useful information for selecting optimal digest schemes for specific needs. This can save on time and resources and generate insights on the observable proteome. However, there remains a need for a tool that evaluates digest schemes beyond protein and amino acid coverages in the proteomic domain. Here, we present ProtView, a versatile in silico protease combination digest evaluation workflow that maps in silico-digested peptides to both protein and genome references, so that the potential observable portions of the proteome, transcriptome, and genome can be identified. The proteomic identification and quantification of evidence for transcriptional, co-transcr

SUBMITTER: Puliasis SS 

PROVIDER: S-EPMC10337256 | biostudies-literature | 2023 Jul

REPOSITORIES: biostudies-literature