Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Complete Genome Assembly and Annotation of Escherichia coli Bacteriophage 55 from Riviere la Quint in Gonaives, Haiti.

ABSTRACT: We present the structural and functional annotation of Escherichia coli bacteriophage 55, which has a genome length of 170,393 bp, with 219 predicted genes.

SUBMITTER: Schwarz JC

PROVIDER: S-EPMC10353447 | biostudies-literature | 2023 Jul

REPOSITORIES: biostudies-literature

ACCESS DATA

Json Xml

Publications

Complete Genome Assembly and Annotation of Escherichia coli Bacteriophage 55 from Rivière la Quint in Gonaïves, Haiti.

Schwarz Joshua C JC An William W Theroux Austen A Vargas Luz D LD Chan Benjamin K BK Turner Paul E PE Burmeister Alita R AR

Microbiology resource announcements 20230605 7

We present the structural and functional annotation of Escherichia coli bacteriophage 55, which has a genome length of 170,393 bp, with 219 predicted genes. ...[more]

PMID: 37272828

Similar Datasets

Complete Genome Assembly and Annotation of Escherichia coli Bacteriophage 107.

Project description:We present the annotated genome sequence of Escherichia coli bacteriophage 107, a T4-like bacteriophage. Phage 107 has a genome length of 167,509 bp and 287 predicted genes.

| S-EPMC10281100 | biostudies-literature

Assembly and Annotation of Escherichia coli Bacteriophage U115.

Project description:We present the annotated genome sequence of Escherichia coli bacteriophage U115, a T4-like bacteriophage. Phage U115 has a genome length of 166,986 bp and has 286 predicted genes.

| S-EPMC8852279 | biostudies-literature

Complete Genome Sequence of Escherichia coli Bacteriophage U136B.

Project description:We report the genome sequence of bacteriophage U136B, which is reliant on the lipopolysaccharide and the antibiotic efflux protein TolC for infection of Escherichia coli and is a useful model for studying trade-offs and trade-ups that shape evolution. Phage U136B has a 49,233-bp genome with 87 predicted genes.

| S-EPMC8104045 | biostudies-literature

Complete Genome Sequence of Escherichia coli Bacteriophage PGT2.

Project description:Bacteriophage PGT2 was isolated from horse feces by using an uncharacterized Escherichia coli strain, 7s, isolated from the same sample as the host. Bacteriophage PGT2 and a related phage, phiKT, which was previously isolated from the same source, are likely to represent a new genus within the Autographivirinae subfamily of the Podoviridae family of viruses.

| S-EPMC5773715 | biostudies-literature

Complete genome sequence of T4-Like Escherichia coli bacteriophage HX01.

Project description:Phage T4 is among the best-characterized biological systems (S. Kanamaru and F. Arisaka, Seikagaku 74:131-135, 2002; E. S. Miller et al., Microbiol. Mol. Biol. Rev. 67:86-156, 2003; W. B. Wood and H. R. Revel, Bacteriol. Rev. 40:847-868, 1976). To date, several genomes of T4-like bacteriophages are available in public databases but without any APEC bacteriophages (H. Jiang et al., Arch. Virol. 156:1489-1492, 2011; L. Kaliniene, V. Klausa, A. Zajanckauskaite, R. Nivinskas, and L. Truncaite, Arch. Virol. 156:1913-1916, 2011; J. H. Kim et al., Vet. Microbiol. 157:164-171, 2012; W. C. Liao et al., J. Virol. 85:6567-6578, 2011). We isolated a bacteriophage from a duck factory, named HX01, that infects avian pathogenic Escherichia coli (APEC). Sequence and morphological analyses revealed that phage HX01 is a T4-like bacteriophage and belongs to the family Myoviridae. Here, we announce the complete genome sequence of phage HX01 and report the results of our analysis.

| S-EPMC3503030 | biostudies-literature

Assembly and Annotation of the Complete Genome Sequence of T4-Like Bacteriophage 132.

Project description:Here, we describe the complete sequence of bacteriophage 132, a T4-like Escherichia coli phage. Phage 132 has a genome of 166,922-bp length, with 286 predicted genes.

| S-EPMC8483715 | biostudies-literature

Complete Genome Sequence of Bacteriophage St11Ph5, Which Infects Uropathogenic Escherichia coli Strain up11.

Project description:Bacteriophage St11Ph5 was isolated from a sewage sample on a particularly phage-resistant uropathogenic Escherichia coli (UPEC) up11 host strain. It appeared to be closely related to bacteriophage G7C, isolated from horse feces; however, it carries a highly divergent host recognition module.

| S-EPMC5764931 | biostudies-literature

Complete Genome Sequence of Escherichia coli O157:H7 Bacteriophage phiJLA23 Isolated in Mexico.

Project description:The bacteriophage phiJLA23 was isolated from an animal feces sample and lytic activity was demonstrated against the Escherichia coli O157:H7 strain. We report the complete nucleotide sequence of bacteriophage phiJLA23, information which may be useful for determining whether this phage is a candidate for biocontrol or another biotechnological application.

| S-EPMC3587941 | biostudies-literature

Complete Genome Sequence of Bacteriophage EC6, Capable of Lysing Escherichia coli O157:H7.

Project description:A bacteriophage, EC6, capable of lysing Escherichia coli serotype O157:H7 was isolated and found to be a member of the family Myoviridae. The genomic sequence of phage EC6 was composed of 86,231 bp with a G+C content of 38.9% and is very similar to the sequences of Escherichia phage wV8 and Salmonella phage Felix O1.

| S-EPMC3569278 | biostudies-literature

Complete Genome Sequence of ZG49, a T7-Like Bacteriophage Lytic to Escherichia coli Isolates.

Project description:Here, we describe the complete genome sequence of the Escherichia coli bacteriophage ZG49, isolated from a sewage sample. ZG49 is a linear double-stranded DNA T7-like podophage, with a genome of 40,291 bp, containing 44 predicted open reading frames.

| S-EPMC5786669 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data