Dataset Information

Network pharmacology and molecular docking to explore Polygoni Cuspidati Rhizoma et Radix treatment for acute lung injury.

ABSTRACT:

Background

Polygoni Cuspidati Rhizoma et Radix (PCRR), a well-known traditional Chinese medicine (TCM), inhibits inflammation associated with various human diseases. However, the anti-inflammatory effects of PCRR in acute lung injury (ALI) and the underlying mechanisms of action remain unclear.

Aim

To determine the ingredients related to PCRR for treatment of ALI using multiple databases to obtain potential targets for fishing.

Methods

Recognized and candidate active compounds for PCRR were obtained from Traditional Chinese Medicine Systems Pharmacology, STITCH, and PubMed databases. Target ALI databases were built using the Therapeutic Target, DrugBank, DisGeNET, Online Mendelian Inheritance in Man, and Genetic Association databases. Network pharmacology includes network construction, target prediction, topological feature analysis, and enrichment analysis. Bioinformatics resources from the Database for Annotation, Visualization and Integrated Discovery were utilized for gene ontology biological process and Kyoto Encyclopedia of Genes and Genomes network pathway enrichment analysis, and molecular docking techniques were adopted to verify the combination of major active ingredients and core targets.

Results

Thirteen bioactive compounds corresponding to the 433 PCRR targets were identified. In addition, 128 genes were closely associated with ALI, 60 of which overlapped with PCRR targets and were considered therapeutically relevant. Functional enrichment analysis suggested that PCRR exerted its pharmacological effects in ALI by modulating multiple pathways, including the cell cycle, cell apoptosis, drug metabolism, inflammation, and immune modulation. Molecular docking results revealed a strong associative relationship between the active ingredient and core target.

Conclusion

PCRR alleviates ALI symptoms via molecular mechanisms predicted by network pharmacology. This study proposes a strategy to elucidate the mechanisms of TCM at the network pharmacology level.

SUBMITTER: Zheng JL

PROVIDER: S-EPMC10353494 | biostudies-literature | 2023 Jul

REPOSITORIES: biostudies-literature

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Publications

Network pharmacology and molecular docking to explore Polygoni Cuspidati Rhizoma et Radix treatment for acute lung injury.

Zheng Jia-Lin JL Wang Xiao X Song Zhe Z Zhou Peng P Zhang Gui-Ju GJ Diao Juan-Juan JJ Han Cheng-En CE Jia Guang-Yuan GY Zhou Xu X Zhang Bao-Qing BQ

World journal of clinical cases 20230701 19

<h4>Background</h4>Polygoni Cuspidati Rhizoma et Radix (PCRR), a well-known traditional Chinese medicine (TCM), inhibits inflammation associated with various human diseases. However, the anti-inflammatory effects of PCRR in acute lung injury (ALI) and the underlying mechanisms of action remain unclear.<h4>Aim</h4>To determine the ingredients related to PCRR for treatment of ALI using multiple databases to obtain potential targets for fishing.<h4>Methods</h4>Recognized and candidate active compou ...[more]

PMID: 37469744

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Dataset Information

Network pharmacology and molecular docking to explore Polygoni Cuspidati Rhizoma et Radix treatment for acute lung injury.

Background

Aim

Methods

Results

Conclusion

Publications

Network pharmacology and molecular docking to explore Polygoni Cuspidati Rhizoma et Radix treatment for acute lung injury.

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