XenoGI 3: using the DTLOR model to reconstruct the evolution of gene families in clades of microbes.
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ABSTRACT:
SUBMITTER: Liu N
PROVIDER: S-EPMC10362622 | biostudies-literature | 2023 Jul
REPOSITORIES: biostudies-literature
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xenoGI 3: using the DTLOR model to reconstruct the evolution of gene families in clades of microbes.
Liu Nuo N Gonzalez Tonatiuh A TA Fischer Jacob J Hong Chan C Johnson Michelle M Mawhorter Ross R Mugnatto Fabrizia F Soh Rachael R Somji Shifa S Wirth Joseph S JS Libeskind-Hadas Ran R Bush Eliot C EC
BMC bioinformatics 20230721 1
To understand genome evolution in a group of microbes, we need to know the timing of events such as duplications, deletions and horizontal transfers. A common approach is to perform a gene-tree / species-tree reconciliation. While a number of software packages perform this type of analysis, none are geared toward a complete reconstruction for all families in an entire clade. Here we describe an update to the xenoGI software package which allows users to perform such an analysis using the newly d ...[more]
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