PhyBWT2: phylogeny reconstruction via eBWT positional clustering.

ABSTRACT:

Background

Molecular phylogenetics studies the evolutionary relationships among the individuals of a population through their biological sequences. It may provide insights about the origin and the evolution of viral diseases, or highlight complex evolutionary trajectories. A key task is inferring phylogenetic trees from any type of sequencing data, including raw short reads. Yet, several tools require pre-processed input data e.g. from complex computational pipelines based on de novo assembly or from mappings against a reference genome. As sequencing technologies keep becoming cheaper, this puts increasing pressure on designing methods that perform analysis directly on their outputs. From this viewpoint, there is a growing interest in alignment-, assembly-, and reference-free metho

SUBMITTER: Guerrini V 

PROVIDER: S-EPMC10399073 | biostudies-literature | 2023 Aug

REPOSITORIES: biostudies-literature