ScopeViewer: A Browser-Based Solution for Visualizing Spatial Transcriptomics Data.

ABSTRACT:

Motivation

Spatial transcriptomics (ST) enables a high-resolution interrogation of molecular characteristics within specific spatial contexts and tissue morphology. Despite its potential, visualization of ST data is a challenging task due to the complexities in handling, sharing and visualizing large image datasets together with molecular information.

Results

We introduce ScopeViewer, a browser-based software designed to overcome these challenges. ScopeViewer offers the following functionalities: (1) It visualizes large image data and associated annotations at various zoom levels, allowing for intricate exploration of the data; (2) It enables dual interactive viewing of the original images along with their annotations, providing a comprehensive understanding of the context;

SUBMITTER: Luo D 

PROVIDER: S-EPMC10401999 | biostudies-literature | 2023 Jul

REPOSITORIES: biostudies-literature