Ggcoverage: an R package to visualize and annotate genome coverage for various NGS data.

ABSTRACT:

Background

Visualizing genome coverage is of vital importance to inspect and interpret various next-generation sequencing (NGS) data. Besides genome coverage, genome annotations are also crucial in the visualization. While different NGS data require different annotations, how to visualize genome coverage and add the annotations appropriately and conveniently is challenging. Many tools have been developed to address this issue. However, existing tools are often inflexible, complicated, lack necessary preprocessing steps and annotations, and the figures generated support limited customization.

Results

Here, we introduce ggcoverage, an R package to visualize and annotate genome coverage of multi-groups and multi-omics. The input files for ggcoverage can be in BAM, BigWig, BedGr

SUBMITTER: Song Y 

PROVIDER: S-EPMC10413535 | biostudies-literature | 2023 Aug

REPOSITORIES: biostudies-literature