TranSyT, an innovative framework for identifying transport systems.

ABSTRACT:

Motivation

The importance and rate of development of genome-scale metabolic models have been growing for the last few years, increasing the demand for software solutions that automate several steps of this process. However, since TRIAGE's release, software development for the automatic integration of transport reactions into models has stalled.

Results

Here, we present the Transport Systems Tracker (TranSyT). Unlike other transport systems annotation software, TranSyT does not rely on manual curation to expand its internal database, which is derived from highly curated records retrieved from the Transporters Classification Database and complemented with information from other data sources. TranSyT compiles information regarding transporter families and proteins, and derives

SUBMITTER: Cunha E 

PROVIDER: S-EPMC10444967 | biostudies-literature | 2023 Aug

REPOSITORIES: biostudies-literature