Trackplot: A flexible toolkit for combinatorial analysis of genomic data.

ABSTRACT: Here, we introduce Trackplot, a Python package for generating publication-quality visualization by a programmable and interactive web-based approach. Compared to the existing versions of programs generating sashimi plots, Trackplot offers a versatile platform for visually interpreting genomic data from a wide variety of sources, including gene annotation with functional domain mapping, isoform expression, isoform structures identified by scRNA-seq and long-read sequencing, as well as chromatin accessibility and architecture without any preprocessing, and also offers a broad degree of flexibility for formats of output files that satisfy the requirements of major journals. The Trackplot package is an open-source software which is freely available on Bioconda (https://anaconda.org/bioconda/tr

SUBMITTER: Zhang Y 

PROVIDER: S-EPMC10503704 | biostudies-literature | 2023 Sep

REPOSITORIES: biostudies-literature