AlignStatPlot: An R package and online tool for robust sequence alignment statistics and innovative visualization of big data.

ABSTRACT: Multiple sequence alignment (MSA) is essential for understanding genetic variations controlling phenotypic traits in all living organisms. The post-analysis of MSA results is a difficult step for researchers who do not have programming skills. Especially those working with large scale data and looking for potential variations or variable sample groups. Generating bi-allelic data and the comparison of wild and alternative gene forms are important steps in population genetics. Customising MSA visualisation for a single page view is difficult, making viewing potential indels and variations challenging. There are currently no bioinformatics tools that permit post-MSA analysis, in which data on gene and single nucleotide scales could be combined with gene annotations and used for cluster analys

SUBMITTER: Alsamman AM 

PROVIDER: S-EPMC10511070 | biostudies-literature | 2023

REPOSITORIES: biostudies-literature