SoyDBean: a database for SNPs reconciliation by multiple versions of soybean reference genomes.

ABSTRACT: Due to the development of sequence technology and decreased cost, many whole genome sequences have been obtained. As a result, extensive genetic variations have been discovered from many populations and germplasms to understand the genetic diversity of soybean (Glycine max [L.] Merr.). However, assessing the quality of variation is essential because the published variants were collected using different bioinformatic methods and parameters. Furthermore, despite the enhanced genome contiguity and more efficient filling of "N" stretches in the new reference genome, there remains a dearth of endeavors to verify the caliber of variations present in it. The primary goal of this research was to discern a dependable set of SNPs that can withstand reconciliation across multiple reference genomes. A

SUBMITTER: Lee Y 

PROVIDER: S-EPMC10514325 | biostudies-literature | 2023 Sep

REPOSITORIES: biostudies-literature