MEGADOCK-on-Colab: an easy-to-use protein-protein docking tool on Google Colaboratory.

ABSTRACT:

Motivation

Since the advent of ColabFold, numerous software packages have been provided with Google Colaboratory-compatible ipynb files, allowing users to effortlessly test and reproduce results without the need for local installation or configuration. MEGADOCK, a protein-protein docking tool, is particularly well-suited for Google Colaboratory due to its lightweight computations and GPU acceleration capabilities. To increase accessibility and promote widespread use, it is crucial to provide a computing environment compatible with Google Colaboratory.

Results

In this study, we report the development of a Google Colaboratory environment for running our protein-protein docking software, MEGADOCK. We provide a comprehensive ipynb file, including the compilation of MEGADOCK with

SUBMITTER: Ohue M 

PROVIDER: S-EPMC10515421 | biostudies-literature | 2023 Sep

REPOSITORIES: biostudies-literature