The chloroplast protein HCF164 is predicted to be associated with Coffea S_H9 resistance factor against Hemileia vastatrix.

ABSTRACT: To explore the connection between chloroplast and coffee resistance factors, designated as S_H1 to S_H9, whole genomic DNA of 42 coffee genotypes was sequenced, and entire chloroplast genomes were de novo assembled. The chloroplast phylogenetic haplotype network clustered individuals per species instead of S_H factors. However, for the first time, it allowed the molecular validation of Coffea arabica as the maternal parent of the spontaneous hybrid "Híbrido de Timor". Individual reads were also aligned on the C. arabica reference genome to relate S_H factors with chloroplast metabolism, and an in-silico analysis of selected nuclear-encoded chloroplast proteins (132 proteins) was performed. The nuclear-encoded thioredoxin-like membrane protein HCF164

SUBMITTER: Guerra-Guimaraes L 

PROVIDER: S-EPMC10520047 | biostudies-literature | 2023 Sep

REPOSITORIES: biostudies-literature