In Silico Verification of Predicted Potential Promoter Sequences in the Rice (Oryza sativa) Genome.

ABSTRACT: The exact identification of promoter sequences remains a serious problem in computational biology, as the promoter prediction algorithms under development continue to produce false-positive results. Therefore, to fully assess the validity of predicted sequences, it is necessary to perform a comprehensive test of their properties, such as the presence of downstream transcribed DNA regions behind them, or chromatin accessibility for transcription factor binding. In this paper, we examined the promoter sequences of chromosome 1 of the rice Oryza sativa genome from the Database of Potential Promoter Sequences predicted using a mathematical algorithm based on the derivation and calculation of statistically significant promoter classes. In this paper TATA motifs and cis-regulatory element

SUBMITTER: Bubnova AN 

PROVIDER: S-EPMC10609952 | biostudies-literature | 2023 Oct

REPOSITORIES: biostudies-literature