PhysiCell Studio: a graphical tool to make agent-based modeling more accessible.

ABSTRACT: Defining a multicellular model can be challenging. There may be hundreds of parameters that specify the attributes and behaviors of objects. Hopefully the model will be defined using some format specification, e.g., a markup language, that will provide easy model sharing (and a minimal step toward reproducibility). PhysiCell is an open source, physics-based multicellular simulation framework with an active and growing user community. It uses XML to define a model and, traditionally, users needed to manually edit the XML to modify the model. PhysiCell Studio is a tool to make this task easier. It provides a graphical user interface that allows editing the XML model definition, including the creation and deletion of fundamental objects, e.g., cell types and substrates in the microenvironment

SUBMITTER: Heiland R 

PROVIDER: S-EPMC10634793 | biostudies-literature | 2023 Dec

REPOSITORIES: biostudies-literature