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Draft Genome Sequence of Alternaria alternata JS-1623, a Fungal Endophyte of Abies koreana.

ABSTRACT: Alternaria alternata JS-1623 is an endophytic fungus isolated from a stem tissue of Korean fir, Abies koreana. Ethyl acetate extracts of culture filtrates exhibited anti-inflammatory activity in LPS induced microglia BV-2 cell without cytotoxicity. Here we report a 33.67 Mb sized genome assembly of JS-1623 comprised of 13 scaffolds with N50 of 4.96 Mb, and 92.41% of BUSCO completeness. GC contents were 50.97%. Of the 11,197 genes annotated, gene families related to the biosynthesis of secondary metabolites or transcription factors were identified.

SUBMITTER: Park SY

PROVIDER: S-EPMC10635108 | biostudies-literature | 2020

REPOSITORIES: biostudies-literature

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Draft Genome Sequence of Alternaria alternata JS-1623, a Fungal Endophyte of Abies koreana.

Park Sook-Young SY Jeon Jongbum J Kim Jung A JA Jeon Mi Jin MJ Jeong Min-Hye MH Kim Youngmin Y Lee Yerim Y Chung Hyunjung H Lee Yong-Hwan YH Kim Soonok S

Mycobiology 20200507 3

Alternaria alternata JS-1623 is an endophytic fungus isolated from a stem tissue of Korean fir, Abies koreana. Ethyl acetate extracts of culture filtrates exhibited anti-inflammatory activity in LPS induced microglia BV-2 cell without cytotoxicity. Here we report a 33.67 Mb sized genome assembly of JS-1623 comprised of 13 scaffolds with N50 of 4.96 Mb, and 92.41% of BUSCO completeness. GC contents were 50.97%. Of the 11,197 genes annotated, gene families related to the biosynthesis ...[more]

PMID: 37970559

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