PyScoMotif: discovery of similar 3D structural motifs across proteins.

ABSTRACT:

Motivation

The fast and accurate detection of similar geometrical arrangements of protein residues, known as 3D structural motifs, is highly relevant for many applications such as binding region and catalytic site detection, drug discovery and structure conservation analyses. With the recent publication of new protein structure prediction methods, the number of available protein structures is exploding, which makes efficient and easy-to-use tools for identifying 3D structural motifs essential.

Results

We present an open-source Python package that enables the search for both exact and mutated motifs with position-specific residue substitutions. The tool is efficient, flexible, accurate, and suitable to run both on computer clusters and personal laptops. Two successful applica

SUBMITTER: Cia G 

PROVIDER: S-EPMC10640396 | biostudies-literature | 2023

REPOSITORIES: biostudies-literature