Model-based characterization of the equilibrium dynamics of transcription initiation and promoter-proximal pausing in human cells.

ABSTRACT: In metazoans, both transcription initiation and the escape of RNA polymerase (RNAP) from promoter-proximal pausing are key rate-limiting steps in gene expression. These processes play out at physically proximal sites on the DNA template and appear to influence one another through steric interactions. Here, we examine the dynamics of these processes using a combination of statistical modeling, simulation, and analysis of real nascent RNA sequencing data. We develop a simple probabilistic model that jointly describes the kinetics of transcription initiation, pause-escape, and elongation, and the generation of nascent RNA sequencing read counts under steady-state conditions. We then extend this initial model to allow for variability across cells in promoter-proximal pause site locations and s

SUBMITTER: Zhao Y 

PROVIDER: S-EPMC10681744 | biostudies-literature | 2023 Nov

REPOSITORIES: biostudies-literature