AdmixPipe v3: facilitating population structure delimitation from SNP data.

ABSTRACT:

Summary

Quantifying genetic clusters (=populations) from genotypic data is a fundamental, but non-trivial task for population geneticists that is compounded by: hierarchical population structure, diverse analytical methods, and complex software dependencies. AdmixPipe v3 ameliorates many of these issues in a single bioinformatic pipeline that facilitates all facets of population structure analysis by integrating outputs generated by several popular packages (i.e. CLUMPAK, EvalAdmix). The pipeline interfaces disparate software packages to parse Admixture outputs and conduct EvalAdmix analyses in the context of multimodal population structure results identified by CLUMPAK. We further streamline these tasks by packaging AdmixPipe v3 within a Docker container to create a standardized a

SUBMITTER: Mussmann SM 

PROVIDER: S-EPMC10689661 | biostudies-literature | 2023

REPOSITORIES: biostudies-literature