Cytoviewer: an R/Bioconductor package for interactive visualization and exploration of highly multiplexed imaging data.

ABSTRACT:

Background

Highly multiplexed imaging enables single-cell-resolved detection of numerous biological molecules in their spatial tissue context. Interactive visualization of multiplexed imaging data is crucial at any step of data analysis to facilitate quality control and the spatial exploration of single cell features. However, tools for interactive visualization of multiplexed imaging data are not available in the statistical programming language R.

Results

Here, we describe cytoviewer, an R/Bioconductor package for interactive visualization and exploration of multi-channel images and segmentation masks. The cytoviewer package supports flexible generation of image composites, allows side-by-side visualization of single channels, and facilitates the spatial visualization of s

SUBMITTER: Meyer L 

PROVIDER: S-EPMC10765786 | biostudies-literature | 2024 Jan

REPOSITORIES: biostudies-literature