PyRates-A code-generation tool for modeling dynamical systems in biology and beyond.

ABSTRACT: The mathematical study of real-world dynamical systems relies on models composed of differential equations. Numerical methods for solving and analyzing differential equation systems are essential when complex biological problems have to be studied, such as the spreading of a virus, the evolution of competing species in an ecosystem, or the dynamics of neurons in the brain. Here we present PyRates, a Python-based software for modeling and analyzing differential equation systems via numerical methods. PyRates is specifically designed to account for the inherent complexity of biological systems. It provides a new language for defining models that mirrors the modular organization of real-world dynamical systems and thus simplifies the implementation of complex networks of interacting dynamic e

SUBMITTER: Gast R 

PROVIDER: S-EPMC10775981 | biostudies-literature | 2023 Dec

REPOSITORIES: biostudies-literature