Selscan 2.0: scanning for sweeps in unphased data.

ABSTRACT:

Summary

Several popular haplotype-based statistics for identifying recent or ongoing positive selection in genomes require knowledge of haplotype phase. Here, we provide an update to selscan which implements a re-definition of these statistics for use in unphased data.

Availability and implementation

Source code and binaries are freely available at https://github.com/szpiech/selscan, implemented in C/C++, and supported on Linux, Windows, and MacOS.

SUBMITTER: Szpiech ZA 

PROVIDER: S-EPMC10789311 | biostudies-literature | 2024 Jan

REPOSITORIES: biostudies-literature