Neo4jsbml: import systems biology markup language data into the graph database Neo4j.

ABSTRACT: Systems Biology Markup Language (SBML) has emerged as a standard for representing biological models, facilitating model sharing and interoperability. It stores many types of data and complex relationships, complicating data management and analysis. Traditional database management systems struggle to effectively capture these complex networks of interactions within biological systems. Graph-oriented databases perform well in managing interactions between different entities. We present neo4jsbml, a new solution that bridges the gap between the Systems Biology Markup Language data and the Neo4j database, for storing, querying and analyzing data. The Systems Biology Markup Language organizes biological entities in a hierarchical structure, reflecting their interdependencies. The inherent graph

SUBMITTER: Gricourt G 

PROVIDER: S-EPMC10798154 | biostudies-literature | 2024

REPOSITORIES: biostudies-literature