GeNLP: a web tool for NLP-based exploration and prediction of microbial gene function.

ABSTRACT:

Summary

GeNLP is a web application that enables exploring microbial gene "semantics" and predictions of uncharacterized gene families based on their genomic context. It utilizes a pre-trained language model to uncover gene relationships and allows users to access and utilize the data as well as make their own predictions through an interactive interface.

Availability and implementation

The web application is accessible from all browsers at: http://gnlp.bursteinlab.org/. All source codes are freely available from GitHub under the MIT license here: https://github.com/burstein-lab/genomic-nlp-server.

SUBMITTER: Miller D 

PROVIDER: S-EPMC10868303 | biostudies-literature | 2024 Feb

REPOSITORIES: biostudies-literature