Transomics2cytoscape: an automated software for interpretable 2.5-dimensional visualization of trans-omic networks.

ABSTRACT: Biochemical network visualization is one of the essential technologies for mechanistic interpretation of omics data. In particular, recent advances in multi-omics measurement and analysis require the development of visualization methods that encompass multiple omics data. Visualization in 2.5 dimension (2.5D visualization), which is an isometric view of stacked X-Y planes, is a convenient way to interpret multi-omics/trans-omics data in the context of the conventional layouts of biochemical networks drawn on each of the stacked omics layers. However, 2.5D visualization of trans-omics networks is a state-of-the-art method that primarily relies on time-consuming human efforts involving manual drawing. Here, we present an R Bioconductor package 'transomics2cytoscape' for automated visualizati

SUBMITTER: Nishida K 

PROVIDER: S-EPMC10876688 | biostudies-literature | 2024 Feb

REPOSITORIES: biostudies-literature