Population diversity, admixture, and demographic trend of the Sumba Ongole cattle based on genomic data.

ABSTRACT:

Objective

Sumba Ongole (SO) cattle are valuable breed due to their important role in the development of Indonesian cattle. Despite rapid advances in molecular technology, no genomic studies on SO cattle have been conducted to date. The aim of this study is to provide genomic profile related to the population diversity, admixture, and demographic trends of SO cattle.

Methods

Genomic information was gathered from 79 SO cattle using the Illumina Bovine SNP50 v3 Beadchip, and for comparative purposes, additional genotypes from 209 cattle populations worldwide were included. The expected and observed heterozygosity, inbreeding coefficient, pairwise fixation indices between-population, and Nei's genetic distance were examined. Multidimensional scaling, admixture, and treemix analy

SUBMITTER: Sudrajad P 

PROVIDER: S-EPMC10915215 | biostudies-literature | 2024 Apr

REPOSITORIES: biostudies-literature