Analysis and visualization of quantitative proteomics data using FragPipe-Analyst.

ABSTRACT: The FragPipe computational proteomics platform is gaining widespread popularity among the proteomics research community because of its fast processing speed and user-friendly graphical interface. Although FragPipe produces well-formatted output tables that are ready for analysis, there is still a need for an easy-to-use and user-friendly downstream statistical analysis and visualization tool. FragPipe-Analyst addresses this need by providing an R shiny web server to assist FragPipe users in conducting downstream analyses of the resulting quantitative proteomics data. It supports major quantification workflows including label-free quantification, tandem mass tags, and data-independent acquisition. FragPipe-Analyst offers a range of useful functionalities, such as various missing value imput

SUBMITTER: Hsiao Y 

PROVIDER: S-EPMC10942459 | biostudies-literature | 2024 Mar

REPOSITORIES: biostudies-literature