CloudProteoAnalyzer: scalable processing of big data from proteomics using cloud computing.

ABSTRACT:

Summary

Shotgun proteomics is widely used in many system biology studies to determine the global protein expression profiles of tissues, cultures, and microbiomes. Many non-distributed computer algorithms have been developed for users to process proteomics data on their local computers. However, the amount of data acquired in a typical proteomics study has grown rapidly in recent years, owing to the increasing throughput of mass spectrometry and the expanding scale of study designs. This presents a big data challenge for researchers to process proteomics data in a timely manner. To overcome this challenge, we developed a cloud-based parallel computing application to offer end-to-end proteomics data analysis software as a service (SaaS). A web interface was provided to users to uplo

SUBMITTER: Li J 

PROVIDER: S-EPMC10942798 | biostudies-literature | 2024

REPOSITORIES: biostudies-literature