Shu: visualization of high-dimensional biological pathways.

ABSTRACT:

Summary

Shu is a visualization tool that integrates diverse data types into a metabolic map, with a focus on supporting multiple conditions and visualizing distributions. The goal is to provide a unified platform for handling the growing volume of multi-omics data, leveraging the metabolic maps developed by the metabolic modeling community. In addition, shu offers a streamlined python API, based on the Grammar of Graphics, for easy integration with data pipelines.

Availability and implementation

Freely available at https://github.com/biosustain/shu under MIT/Apache 2.0 license. Binaries are available in the release page of the repository and the web application is deployed at https://biosustain.github.io/shu.

SUBMITTER: Carrasco Muriel J 

PROVIDER: S-EPMC10957514 | biostudies-literature | 2024 Mar

REPOSITORIES: biostudies-literature