Effects of nitrate- and ammonium- nitrogen on anatomical and physiological responses of Catalpa bungei under full and partial root-zone drought
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ABSTRACT:
SUBMITTER: Xu T
PROVIDER: S-EPMC10964640 | biostudies-literature | 2024 Jan
REPOSITORIES: biostudies-literature
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Project description:Catalpa bungei Transcriptome or Gene expression
| PRJNA559964 | ENA
Project description:Catalpa bungei Transcriptome or Gene expression
| PRJNA401954 | ENA
Project description:Catalpa bungei (Bignoniaceae) is a deciduous tree native to China. We developed microsatellite markers for C. bungei to investigate its population genetics. One hundred seventy-seven expressed sequence tag (EST)-simple sequence repeat (SSR) primer pairs were isolated and characterized using next-generation sequencing. Thirty of these primer pairs were polymorphic loci in 52 individuals of C. bungei. The number of alleles ranged from two to 18 with observed and expected heterozygosity values of 0.05-1.00 and 0.18-0.95, respectively. The fixation index ranged from -1.00 to 1.00 with an average of 0.32. No linkage disequilibrium was detected in any pair of loci. All markers showed good amplification results in four species (C. bungei, C. fargesii, C. duclouxii, and C. ovata) except three loci. These polymorphic markers are expected to be helpful in further studies on the systematics and phylogeography of C. bungei and related species.
| S-EPMC4850053 | biostudies-literature
Project description:BackgroundFloral transition plays an important role in development, and proper time is necessary to improve the value of valuable ornamental trees. The molecular mechanisms of floral transition remain unknown in perennial woody plants. "Bairihua" is a type of C. bungei that can undergo floral transition in the first planting year.ResultsHere, we combined short-read next-generation sequencing (NGS) and single-molecule real-time (SMRT) sequencing to provide a more complete view of transcriptome regulation during floral transition in C. bungei. The circadian rhythm-plant pathway may be the critical pathway during floral transition in early flowering (EF) C. bungei, according to horizontal and vertical analysis in EF and normal flowering (NF) C. bungei. SBP and MIKC-MADS-box were seemingly involved in EF during floral transition. A total of 61 hub genes were associated with floral transition in the MEturquoise model with Weighted Gene Co-expression Network Analysis (WGCNA). The results reveal that ten hub genes had a close connection with the GASA homologue gene (Cbu.gene.18280), and the ten co-expressed genes belong to five flowering-related pathways. Furthermore, our study provides new insights into the complexity and regulation of alternative splicing (AS). The ratio or number of isoforms of some floral transition-related genes is different in different periods or in different sub-genomes.ConclusionsOur results will be a useful reference for the study of floral transition in other perennial woody plants. Further molecular investigations are needed to verify our sequencing data.
| S-EPMC7376858 | biostudies-literature
Project description:BackgroundPartial and full root-zone drought stresses are two widely used methods to induce soil drying in plant container-culture experiments. Two methods might lead to different observational results in plant water relation, such as non-hydraulic root-sourced signal (nHRS). We compared partial and full stress methods to induce nHRS in two diploids (MO1 and MO4) and two tetraploids (DM 22 and DM 31) wheat varieties under pot-culture conditions. Partial root-zone stress (PS) was performed using split-root alternative water supply method (one half wetting and the other drying) to induce the continuous operation of nHRS, and full root-zone stress (FS) was exposed to whole soil block to induce periodic operation of nHRS since jointing stage.ResultsWe tested the two drought methods whether it influenced the nHRS mediated signalling and yield formation in primitive wheat species. Results showed that partial root-zone stress caused more increase in abscisic acid (ABA) production and decline in stomatal closure than full root-zone stress method. The incline in ABA was closely related to triggering reactive oxygen species (ROS) generation, and reducing cytokinin synthesis which, thereby, led to crosstalk with other signalling molecules. Furthermore, PS up-regulated the antioxidant defense system and proline content. Water use efficiency and harvest index was significantly increased in PS, suggesting that PS was more likely to simulate the occurrence of nHRS by increasing the adaptive strategies of plants and closer to natural status of soil drying than FS.ConclusionThese findings lead us to conclude that partial root-zone stress method is more feasible method to induce nHRS which has great capacity to reduce water consumption and enhance plant adaptation to constantly changing environment. These observations also suggest that different root-zone planting methods can be considered to improve the plant phenotypic plasticity and tolerance in water-limited rainfed environments.
| S-EPMC6624928 | biostudies-literature