Synthetic eco-evolutionary dynamics in simple molecular environment.

ABSTRACT: The understanding of eco-evolutionary dynamics, and in particular the mechanism of coexistence of species, is still fragmentary and in need of test bench model systems. To this aim we developed a variant of SELEX in vitro selection to study the evolution of a population of ∼10¹⁵ single-strand DNA oligonucleotide 'individuals'. We begin with a seed of random sequences which we select via affinity capture from ∼10¹² DNA oligomers of fixed sequence ('resources') over which they compete. At each cycle ('generation'), the ecosystem is replenished via PCR amplification of survivors. Massive parallel sequencing indicates that across generations the variety of sequences ('species') drastically decreases, while some of them become populous and dominate the ecosystem. The simpl

SUBMITTER: Casiraghi L 

PROVIDER: S-EPMC10965223 | biostudies-literature | 2024 Mar

REPOSITORIES: biostudies-literature