Genome-wide identification and stress response analysis of BcaCPK gene family in amphidiploid Brassica carinata.

ABSTRACT:

Background

Calcium-dependent protein kinases (CPKs) are crucial for recognizing and transmitting Ca²⁺ signals in plant cells, playing a vital role in growth, development, and stress response. This study aimed to identify and detect the potential roles of the CPK gene family in the amphidiploid Brassica carinata (BBCC, 2n = 34) using bioinformatics methods.

Results

Based on the published genomic information of B. carinata, a total of 123 CPK genes were identified, comprising 70 CPK genes on the B subgenome and 53 on the C subgenome. To further investigate the homologous evolutionary relationship between B. carinata and other plants, the phylogenetic tree was constructed using CPKs in B. carinata and Arabidopsis thaliana. The phylogenetic analysis classified 123 fam

SUBMITTER: Zuo D 

PROVIDER: S-EPMC11022436 | biostudies-literature | 2024 Apr

REPOSITORIES: biostudies-literature