Shaoxia: a web-based interactive analysis platform for single cell RNA sequencing data.

ABSTRACT:

Background

In recent years, Single-cell RNA sequencing (scRNA-seq) is increasingly accessible to researchers of many fields. However, interpreting its data demands proficiency in multiple programming languages and bioinformatic skills, which limited researchers, without such expertise, exploring information from scRNA-seq data. Therefore, there is a tremendous need to develop easy-to-use software, covering all the aspects of scRNA-seq data analysis.

Results

We proposed a clear analysis framework for scRNA-seq data, which emphasized the fundamental and crucial roles of cell identity annotation, abstracting the analysis process into three stages: upstream analysis, cell annotation and downstream analysis. The framework can equip researchers with a comprehensive understanding o

SUBMITTER: Wei W 

PROVIDER: S-EPMC11040744 | biostudies-literature | 2024 Apr

REPOSITORIES: biostudies-literature