MolScore: a scoring, evaluation and benchmarking framework for generative models in de novo drug design.

ABSTRACT: Generative models are undergoing rapid research and application to de novo drug design. To facilitate their application and evaluation, we present MolScore. MolScore already contains many drug-design-relevant scoring functions commonly used in benchmarks such as, molecular similarity, molecular docking, predictive models, synthesizability, and more. In addition, providing performance metrics to evaluate generative model performance based on the chemistry generated. With this unification of functionality, MolScore re-implements commonly used benchmarks in the field (such as GuacaMol, MOSES, and MolOpt). Moreover, new benchmarks can be created trivially. We demonstrate this by testing a chemical language model with reinforcement learning on three new tasks of increasing complexity related to

SUBMITTER: Thomas M 

PROVIDER: S-EPMC11141043 | biostudies-literature | 2024 May

REPOSITORIES: biostudies-literature