VSNP: a SNP pipeline for the generation of transparent SNP matrices and phylogenetic trees from whole genome sequencing data sets.

ABSTRACT:

Background

Several single nucleotide polymorphism (SNP) pipelines exist, each offering its own advantages. Among them and described here is vSNP that has been developed over the past decade and is specifically tailored to meet the needs of diagnostic laboratories. Laboratories that aim to provide rapid whole genome sequencing results during outbreak investigations face unique challenges. vSNP addresses these challenges by enabling users to verify and validate sequence accuracy with ease- having utility across various pathogens, being fully auditable, and presenting results that are easy to interpret and can be comprehended by individuals with diverse backgrounds.

Results

vSNP has proven effective for real-time phylogenetic analysis of disease outbreaks and eradication effort

SUBMITTER: Hicks J 

PROVIDER: S-EPMC11143592 | biostudies-literature | 2024 Jun

REPOSITORIES: biostudies-literature