TomoPyUI: a user-friendly tool for rapid tomography alignment and reconstruction.

ABSTRACT: The management and processing of synchrotron and neutron computed tomography data can be a complex, labor-intensive and unstructured process. Users devote substantial time to both manually processing their data (i.e. organizing data/metadata, applying image filters etc.) and waiting for the computation of iterative alignment and reconstruction algorithms to finish. In this work, we present a solution to these problems: TomoPyUI, a user interface for the well known tomography data processing package TomoPy. This highly visual Python software package guides the user through the tomography processing pipeline from data import, preprocessing, alignment and finally to 3D volume reconstruction. The TomoPyUI systematic intermediate data and metadata storage system improves organization, and the i

SUBMITTER: Welborn SS 

PROVIDER: S-EPMC11226142 | biostudies-literature | 2024 Jul

REPOSITORIES: biostudies-literature