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Setting the morphologic quality limits enabling accurate classification of charred archaeological grape seeds.

ABSTRACT: This study investigates the morphological changes in grape pips resulting from various charring conditions. Employing high-resolution scanning combined with morphometric measurements for morphological analysis, we aimed to understand the effects of charring on grape pips. Our morphometric analysis demonstrated significant alterations in seed shape above 250 °C. The length-width ratio and the occurrence of cracks notably changed, providing a basis for assessing charring conditions. In addition, applying a machine learning classification method, we determined that accurate classification of grape varieties by the morphometric analysis method is feasible for seeds charred at up to 250 °C and 8 h. Integrating the morphometric changes and temperature ranges suitable for classification, we developed a sorting model for archaeological seeds. By projecting length-width ratios onto a curve calculated from controlled conditions, we estimated charring temperatures. Approximately 50% of archaeological seeds deviated from the model, indicating drastic charring conditions. This sorting model facilitates a stringent selection of seeds fit for classification, enhancing the accuracy of our machine learning-based methodology. In conclusion, combining machine learning with morphometric sorting enables the identification of charred grape seeds suitable for identification by the morphometric method. This comprehensive approach provides a valuable tool for future research for the identification of charred grape seeds found in archaeological contexts, enhancing our understanding of ancient viticulture practices and grape cultivation.

SUBMITTER: Landa V

PROVIDER: S-EPMC11245623 | biostudies-literature | 2024 Jul

REPOSITORIES: biostudies-literature

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Setting the morphologic quality limits enabling accurate classification of charred archaeological grape seeds.

Landa Vlad V Shapira Yekaterina Y Eliyahu-Behar Adi A Ben-Arie Reut Levitan RL Weiss Ehud E Reuveni Yuval Y Drori Elyashiv E

Scientific reports 20240712 1

This study investigates the morphological changes in grape pips resulting from various charring conditions. Employing high-resolution scanning combined with morphometric measurements for morphological analysis, we aimed to understand the effects of charring on grape pips. Our morphometric analysis demonstrated significant alterations in seed shape above 250 °C. The length-width ratio and the occurrence of cracks notably changed, providing a basis for assessing charring conditions. In addition, a ...[more]

PMID: 38997329

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Project description:Biodegradable packaging materials represent one possible solution for how to reduce the negative environmental impact of plastics. The main idea of this work was to investigate the possibility of utilizing grape seed lignin for the modification of polyhydroxyalkanoates with the use of its antioxidant capacity in packaging films. For this purpose, polymeric films based on the blend of high crystalline poly(3-hydroxybutyrate) (PHB) and amorphous polyhydroxyalkanoate (PHA) were prepared. PHB/PHA films displayed Young modulus of 240 MPa, tensile strength at a maximum of 6.6 MPa and elongation at break of 95.2%. The physical properties of PHB/PHA films were modified by the addition of 1-10 wt% of grape seeds lignin (GS-L). GS-L lignin showed a high antioxidant capacity: 238 milligrams of Trolox equivalents were equal to one gram of grape seeds lignin. The incorporation of grape seeds lignin into PHB/PHA films positively influenced their gas barrier properties, antioxidant activity and biodegradability. The values of oxygen and carbon dioxide transition rate of PHB/PHA with 1 wt% of GS-L were 7.3 and 36.3 cm3 m-2 24 h 0.1 MPa, respectively. The inhibition percentage of the ABTS radical determined in PHB/PHA/GS-L was in the range of 29.2% to 100% depending on the lignin concentration. The biodegradability test carried out under controlled composting environment for 90 days showed that the PHB/PHA film with 50 w/w% of amorphous PHA reached the degradability degree of 68.8% being about 26.6% higher decomposition than in the case of neat high crystalline PHB film. The degradability degree of PHA films in compost within the tested period reflected the modification of the semi-crystalline character and varied with the incorporated lignin. From the toxicological point of view, the composts obtained after biodegradation of PHA films proved the non-toxicity of PHB/PHA/GS-L materials and its degradation products showed a positive effect on white mustard (Sinapis alba L.) seeds germination.

Project description:BackgroundIn melanoma, morphology-based classification systems have not been able to provide relevant information for selecting treatments for patients whose tumors have metastasized. The recent identification of causative genetic alterations has revealed mutations in signaling pathways that offer targets for therapy. Identifying morphologic surrogates that can identify patients whose tumors express such alterations (or functionally equivalent alterations) would be clinically useful for therapy stratification and for retrospective analysis of clinical trial data.Methodology/principal findingsWe defined and assessed a panel of histomorphologic measures and correlated them with the mutation status of the oncogenes BRAF and NRAS in a cohort of 302 archival tissues of primary cutaneous melanomas from an academic comprehensive cancer center. Melanomas with BRAF mutations showed distinct morphological features such as increased upward migration and nest formation of intraepidermal melanocytes, thickening of the involved epidermis, and sharper demarcation to the surrounding skin; and they had larger, rounder, and more pigmented tumor cells (all p-values below 0.0001). By contrast, melanomas with NRAS mutations could not be distinguished based on these morphological features. Using simple combinations of features, BRAF mutation status could be predicted with up to 90.8% accuracy in the entire cohort as well as within the categories of the current World Health Organization (WHO) classification. Among the variables routinely recorded in cancer registries, we identified age < 55 y as the single most predictive factor of BRAF mutation in our cohort. Using age < 55 y as a surrogate for BRAF mutation in an independent cohort of 4,785 patients of the Southern German Tumor Registry, we found a significant survival benefit (p < 0.0001) for patients who, based on their age, were predicted to have BRAF mutant melanomas in 69% of the cases. This group also showed a different pattern of metastasis, more frequently involving regional lymph nodes, compared to the patients predicted to have no BRAF mutation and who more frequently displayed satellite, in-transit metastasis, and visceral metastasis (p < 0.0001).ConclusionsRefined morphological classification of primary melanomas can be used to improve existing melanoma classifications by forming subgroups that are genetically more homogeneous and likely to differ in important clinical variables such as outcome and pattern of metastasis. We expect this information to improve classification and facilitate stratification for therapy as well as retrospective analysis of existing trial data.

Dataset Information

Setting the morphologic quality limits enabling accurate classification of charred archaeological grape seeds.

Publications

Setting the morphologic quality limits enabling accurate classification of charred archaeological grape seeds.

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