Analyzing Runs of Homozygosity Reveals Patterns of Selection in German Brown Cattle.

ABSTRACT: An increasing trend in ancestral and classical inbreeding coefficients as well as inbreeding depression for longevity were found in the German Brown population. In addition, the proportion of US Brown Swiss genes is steadily increasing in German Browns. Therefore, the aim of the present study was to analyze the presence and genomic localization of runs of homozygosity (ROH) in order to evaluate their associations with the proportion of US Brown Swiss genes and survival rates of cows to higher lactations. Genotype data were sampled in 2364 German Browns from 258 herds. The final data set included 49,693 autosomal SNPs. We identified on average 35.996 ± 7.498 ROH per individual with a mean length of 8.323 ± 1.181 Mb. The genomic inbreeding coefficient F_ROH was 0.122 ± 0.032 and it

SUBMITTER: Wirth A 

PROVIDER: S-EPMC11354284 | biostudies-literature | 2024 Aug

REPOSITORIES: biostudies-literature