Mapping dispersed repetitive loci using semi-specific PCR cloning and somatic cell hybrid mapping.

ABSTRACT: A simple and effective method based upon semi-specific PCR followed by cloning has been developed. Chromosomal mapping of the generated fragment on a somatic cell hybrid panel identifies the chromosomal position, and yields a unique sequence tag for the site. Using this method, the chromosomal location of one porcine endogenous retrovirus (PERV) was determined. The porcine genomic sequences were first amplified by PCR using a PERV-specific primer and a porcine short interspersed nuclear element (SINE)-specific primer. PCR products were cloned, and those sequences that contained PERV plus flanking regions were selected using a second round of PCR and cloning. Sequences flanking the PERV were determined and a PERV-B was physically mapped on porcine chromosome 17 using a somatic hybrid panel.

SUBMITTER: Deng YM 

PROVIDER: S-EPMC115187 | biostudies-literature | 2000 Dec

REPOSITORIES: biostudies-literature