Meeting the challenge of genomic analysis: a collaboratively developed workshop for pangenomics and topological data analysis.

ABSTRACT:

Motivation

As genomics data analysis becomes increasingly intricate, researchers face the challenge of mastering various software tools. The rise of Pangenomics analysis, which examines the complete set of genes in a group of genomes, is particularly transformative in understanding genetic diversity. Our interdisciplinary team of biologists and mathematicians developed a short Pangenomics Workshop covering Bash, Python scripting, Pangenome, and Topological Data Analysis. These skills provide deeper insights into genetic variations and their implications in Evolutionary Biology. The workshop uses a Conda environment for reproducibility and accessibility. Developed in The Carpentries Incubator infrastructure, the workshop aims to equip researchers with essential skills for Pangenomic

SUBMITTER: Contreras-Peruyero H 

PROVIDER: S-EPMC11525208 | biostudies-literature | 2024

REPOSITORIES: biostudies-literature