SNPAnalyzer: a web-based integrated workbench for single-nucleotide polymorphism analysis.

ABSTRACT: SNPAnalyzer is a software that performs four essential statistical analyses of SNPs in a common computational environment. It is composed of three main modules: (i) data manipulation, (ii) analysis and (iii) visualization. The data manipulation module is responsible for data input and output, and handles genotype, phenotype and genetic distance data. To ensure user convenience, the data format is simple. The analysis module performs statistical calculations and consists of four subcomponents: (i) Hardy-Weinberg equilibrium, (ii) Haplotype Estimation, (iii) linkage disequilibrium (LD) and (iv) quantitative trait locus analysis. The main feature of the analysis module is multiple implementations of different algorithms and indices for haplotype estimation and for LD analysis. This enables us

SUBMITTER: Yoo J 

PROVIDER: S-EPMC1160189 | biostudies-literature | 2005 Jul

REPOSITORIES: biostudies-literature