Tokenvizz: GraphRAG-Inspired Tokenization Tool for Genomic Data Discovery and Visualization.

ABSTRACT: One of the primary challenges in biomedical research is the interpretation of complex genomic relationships and the prediction of functional interactions across the genome. Tokenvizz is a novel tool for genomic analysis that enhances data discovery and visualization by combining GraphRAG-inspired tokenization with graph-based modeling. In Tokenvizz, genomic sequences are represented as graphs, where sequence k-mers (tokens) serve as nodes and attention scores as edge weights, enabling researchers to visually interpret complex, non-linear relationships within DNA sequences. Through a web-based visualization interface, researchers can interactively explore these genomic relationships and extract biologically meaningful insights about regulatory patterns and functional elements. Applied to pr

SUBMITTER: Oguztuzun C 

PROVIDER: S-EPMC11642852 | biostudies-literature | 2024 Dec

REPOSITORIES: biostudies-literature