The Rice Online Expression Profiles Array Database Version 2 (ROADv2): An Interactive Atlas for Rice Functional Genomics.

ABSTRACT: The Rice Online expression profiles Array Database version 2 (ROADv2; https://roadv2.khu.ac.kr ), an enhanced database for rice gene expression analysis, transitions from the previous microarray platforms to RNA-Seq data for improved accuracy. It encompasses 328 datasets from diverse experimental series, including anatomy, abiotic and biotic stress, hormone response, and nutrient starvation. Key updates include gene annotation (upgraded to RGAP version 7) and functional enrichment data (utilizing recent Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) versions). ROADv2 debuts protein-protein interaction (PPI) network analysis and broadens interactive visualization across all features. Gene expression data are segmented into anatomy, biotic, abiotic, nutrient, and hormo

SUBMITTER: Hwang W 

PROVIDER: S-EPMC11671470 | biostudies-literature | 2024 Dec

REPOSITORIES: biostudies-literature