Analysis of Kinship and Population Genetic Structure of 53 Apricot Resources Based on Whole Genome Resequencing.

ABSTRACT: Based on the single nucleotide polymorphism (SNP) markers developed by whole genome resequencing (WGRS), the relationship and population genetic structure of 53 common apricot (P. armeniaca) varieties were analyzed to provide a theoretical basis for revealing the phylogenetic relationship and classification of the common apricot. WGRS was performed on 53 common apricot varieties, and high-quality SNP sites were obtained after alignment with the "Yinxiangbai" apricot genome as a reference. Phylogenetic analysis, G matrix analysis, principal component analysis, and population structure analysis were performed using Genome-wide Complex Trait Analysis (GCTA), FastTree, Admixture, and other software. The average comparison ratio between the sequencing results and the reference gen

SUBMITTER: Xin Q 

PROVIDER: S-EPMC11674255 | biostudies-literature | 2024 Dec

REPOSITORIES: biostudies-literature