GENA-LM: a family of open-source foundational DNA language models for long sequences.

ABSTRACT: Recent advancements in genomics, propelled by artificial intelligence, have unlocked unprecedented capabilities in interpreting genomic sequences, mitigating the need for exhaustive experimental analysis of complex, intertwined molecular processes inherent in DNA function. A significant challenge, however, resides in accurately decoding genomic sequences, which inherently involves comprehending rich contextual information dispersed across thousands of nucleotides. To address this need, we introduce GENA language model (GENA-LM), a suite of transformer-based foundational DNA language models capable of handling input lengths up to 36 000 base pairs. Notably, integrating the newly developed recurrent memory mechanism allows these models to process even larger DNA segments. We provide pre-trai

SUBMITTER: Fishman V 

PROVIDER: S-EPMC11734698 | biostudies-literature | 2025 Jan

REPOSITORIES: biostudies-literature